Shaw Andersen (lovevelvet99)

While RV infection induced minimal changes to TJs, the IL-13-matured hNECs has reduced capacity for upregulation of IFN-λ1 and CXCL10 but further increased the expression of TSLP upon RV infection. These findings suggested that IL-13-mediated dysfunction of TJs and compromised epithelial barrier. IL-13-induced cilia loss conferred lowered viral replication and impaired antiviral responses of nasal epithelium against RV infection.Protein ubiquitylation is an important posttranslational modification (PTM), which is involved in diverse biological processes and plays an essential role in the regulation of physiological mechanisms and diseases. The Protein Lysine Modifications Database (PLMD) has accumulated abundant ubiquitylated proteins with their substrate sites for more than 20 kinds of species. Numerous works have consequently developed a variety of ubiquitylation site prediction tools across all species, mainly relying on the predefined sequence features and machine learning algorithms. However, the difference in ubiquitylated patterns between these species stays unclear. In this work, the sequence-based characterization of ubiquitylated substrate sites has revealed remarkable differences among plants, animals, and fungi. Then an improved word-embedding scheme based on the transfer learning strategy was incorporated with the multilayer convolutional neural network (CNN) for identifying protein ubiquitylation sites. For the prediction of plant ubiquitylation sites, the proposed deep learning scheme could outperform the machine learning-based methods, with the accuracy of 75.6%, precision of 73.3%, recall of 76.7%, F-score of 0.7493, and 0.82 AUC on the independent testing set. Although the ubiquitylated specificity of substrate sites is complicated, this work has demonstrated that the application of the word-embedding method can enable the extraction of informative features and help the identification of ubiquitylated sites. To accelerate the investigation of protein ubiquitylation, the data sets and source code used in this study are freely available at https//github.com/wang-hong-fei/DL-plant-ubsites-prediction.Although the mineralization in tendon tissue has been reported in a series of aging and disease models, the underlying mechanisms remain unknown. This study aimed to describe the appearance of heterotopic ossification in rat Achilles tendon and further verify whether this tissue metaplasia is related to the enhanced osteogenic differentiation of tendon stem/progenitor cells (TSPCs) owing to the higher expression of bone morphogenetic proteins (BMP-2/4/7) with aging. The male SD rats, aged 4, 8, and 20 months (M), were used. The analyses of ossification and BMP expression in tendon were tested by radiological view (X-ray and CT), histological staining [hematoxylin and eosin (HE), Alcian blue, and Alizarin red], immunohistochemistry, and Western blot. The osteogenic differentiation potential and BMP expression of TSPCs were examined by Alizarin red S staining and real-time PCR. TSPCs were treated with BMP-2 or noggin, and the osteogenic differentiation potential was also examined. X-ray and CT showed the appearance of heterotopic ossification in tendon, and the volume and density of ossification was increased with aging. Histological staining showed the appearance of calcified region surrounded by chondrocyte-like cells and the increased osteogenesis-related gene and BMP expression in ossified tendon with aging. Moreover, the osteogenic differentiation potential and BMP expression in TSPCs isolated from ossified tendon were increased with aging. Additionally, BMP-2 increased the calcium nodule formation and osteogenesis-related gene expression in TSPCs. The addition of noggin inhibited BMP-induced enhancement of osteogenic differentiation. Thus, these findings suggested that the enhanced osteogenic differentiation of TSPCs contributes to the increased heterotopic ossification in aged tendon, which might be induced by