Thomasen Warner (faucetquill7)

In the real world, multivariate time series from the dynamical system are correlated with deterministic relationships. Analyzing them dividedly instead of utilizing the shared-pattern of the dynamical system is time consuming and cumbersome. Multitask learning (MTL) is an effective inductive bias method to utilize latent shared features and discover the structural relationships from related tasks. Base on this concept, we propose a novel MTL model for multivariate chaotic time-series prediction, which could learn both dynamic-shared and dynamic-specific patterns. We implement the dynamic analysis of multiple time series through a special network structure design. The model could disentangle the complex relationships among multivariate chaotic time series and derive the common evolutionary trend of the multivariate chaotic dynamical system by inductive bias. We also develop an efficient Crank--Nicolson-like curvilinear update algorithm based on the alternating direction method of multipliers (ADMM) for the nonconvex nonsmooth Stiefel optimization problem. Simulation results and analysis demonstrate the effectiveness on dynamic-shared pattern discovery and prediction performance.Computer-assisted algorithms have become a mainstay of biomedical applications to improve accuracy and reproducibility of repetitive tasks like manual segmentation and annotation. We propose a novel pipeline for red blood cell detection and counting in thin blood smear microscopy images, named RBCNet, using a dual deep learning architecture. RBCNet consists of a U-Net first stage for cell-cluster segmentation, followed by a second stage Faster R-CNN for detecting small cell objects within clusters, identified as connected components from the U-Net stage. RBCNet uses cell clustering instead of region proposals, which is robust to cell fragmentation, is highly scalable for detecting small objects or fine scale morphological structures in very large images, can be trained using non-overlapping tiles, and during inference is adaptive to the scale of cell-clusters with a low memory footprint. We tested our method on an archived collection of human malaria smears with nearly 200,000 labeled cells across 965 images from 193 patients, acquired in Bangladesh, with each patient contributing five images. Cell detection accuracy using RBCNet was higher than 97%. The novel dual cascade RBCNet architecture provides more accurate cell detections because the foreground cell-cluster masks from U-Net adaptively guide the detection stage, resulting in a notably higher true positive and lower false alarm rates, compared to traditional and other deep learning methods. The RBCNet pipeline implements a crucial step towards automated malaria diagnosis.Breast Ultrasound (BUS) imaging has been recognized as an essential imaging modality for breast masses classification in China. Current deep learning (DL) based solutions for BUS classification seek to feed ultrasound (US) images into deep convolutional neural networks (CNNs), to learn a hierarchical combination of features for discriminating malignant and benign masses. One existing problem in current DL-based BUS classification was the lack of spatial and channel-wise features weighting, which inevitably allow interference from redundant features and low sensitivity. In this study, we aim to incorporate the instructive information provided by breast imaging reporting and data system (BI-RADS) within DL-based classification. A novel DL-based BI-RADS Vector-Attention Network (BVA Net) that trains with both texture information and decoded information from BI-RADS stratifications was proposed for the task. Three baseline models, pretrained DenseNet-121, ResNet-50 and Residual-Attention Network(RA Net) were included for comparison. Experiments were conducted on a large scale private main dataset and two public datasets, UDIAT and BUSI. On the main dataset, BVA Net outperformed other models, in terms of AUC (area under the receiver